Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AP001094.4-201ENST00000579008 2176 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AP002383.4-201ENST00000442518 975 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AC011498.5-201ENST00000592027 486 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AL691403.2-201ENST00000618460 490 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 LINC00304-203ENST00000565008 1864 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 AC084018.2-201ENST00000613093 2607 ntBASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM3Q53GG5 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 AC005104.2-201ENST00000427818 678 ntBASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 AC010240.3-201ENST00000607688 395 ntBASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 HLA-J-201ENST00000462773 1622 ntBASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 IL9RP2-201ENST00000423948 1312 ntBASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM3Q53GG5 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms