Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 METTL21AP1-201ENST00000438852 635 ntBASIC14.15□□□□□ -0.14
LMO4P61968 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.15□□□□□ -0.14
LMO4P61968 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.15□□□□□ -0.14
LMO4P61968 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.15□□□□□ -0.14
LMO4P61968 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.15□□□□□ -0.14
LMO4P61968 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.15□□□□□ -0.14
LMO4P61968 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC14.15□□□□□ -0.14
LMO4P61968 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMO4P61968 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
LMO4P61968 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.14□□□□□ -0.15
LMO4P61968 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.14□□□□□ -0.15
LMO4P61968 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.14□□□□□ -0.15
LMO4P61968 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LMO4P61968 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.14□□□□□ -0.15
LMO4P61968 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 REXO1L3P-201ENST00000622202 1288 ntBASIC14.14□□□□□ -0.15
LMO4P61968 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
LMO4P61968 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.14□□□□□ -0.15
LMO4P61968 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.14□□□□□ -0.15
LMO4P61968 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.14□□□□□ -0.15
LMO4P61968 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMO4P61968 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 NOC2LP1-202ENST00000452600 2235 ntBASIC14.13□□□□□ -0.15
LMO4P61968 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.13□□□□□ -0.15
LMO4P61968 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 AP000344.2-201ENST00000512987 629 ntBASIC14.13□□□□□ -0.15
LMO4P61968 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.13□□□□□ -0.15
LMO4P61968 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 AL355385.1-201ENST00000606123 409 ntBASIC14.13□□□□□ -0.15
LMO4P61968 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.13□□□□□ -0.15
LMO4P61968 AL645728.2-201ENST00000641974 660 ntBASIC14.13□□□□□ -0.15
LMO4P61968 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
LMO4P61968 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.13□□□□□ -0.15
LMO4P61968 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.13□□□□□ -0.15
LMO4P61968 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMO4P61968 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LMO4P61968 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14.13□□□□□ -0.15
LMO4P61968 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms