Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
CKS1BP61024 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC12.21□□□□□ -0.45
CKS1BP61024 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CKS1BP61024 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
CKS1BP61024 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 ISG20-202ENST00000379224 540 ntTSL 3 BASIC12.21□□□□□ -0.45
CKS1BP61024 MIR564-202ENST00000385049 94 ntBASIC12.21□□□□□ -0.45
CKS1BP61024 AC133681.1-201ENST00000465482 601 ntBASIC12.21□□□□□ -0.45
CKS1BP61024 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
CKS1BP61024 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC12.21□□□□□ -0.46
CKS1BP61024 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
CKS1BP61024 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC12.21□□□□□ -0.46
CKS1BP61024 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.21□□□□□ -0.46
CKS1BP61024 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC12.21□□□□□ -0.46
CKS1BP61024 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.21□□□□□ -0.46
CKS1BP61024 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.21□□□□□ -0.46
CKS1BP61024 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC12.21□□□□□ -0.46
CKS1BP61024 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 NARF-204ENST00000390006 1766 ntTSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC12.2□□□□□ -0.46
CKS1BP61024 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 APTR-205ENST00000447009 902 ntTSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 MMAB-206ENST00000540016 945 ntTSL 3 BASIC12.2□□□□□ -0.46
CKS1BP61024 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
CKS1BP61024 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CKS1BP61024 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC12.2□□□□□ -0.46
CKS1BP61024 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.19□□□□□ -0.46
CKS1BP61024 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.19□□□□□ -0.46
CKS1BP61024 PP12613-201ENST00000424958 2230 ntBASIC12.19□□□□□ -0.46
CKS1BP61024 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
CKS1BP61024 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.19□□□□□ -0.46
CKS1BP61024 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.19□□□□□ -0.46
CKS1BP61024 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CKS1BP61024 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC12.19□□□□□ -0.46
CKS1BP61024 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC12.19□□□□□ -0.46
CKS1BP61024 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms