Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL18A1P39060 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
COL18A1P39060 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC22.57■■□□□ 1.2
COL18A1P39060 AC091167.2-201ENST00000579581 588 ntBASIC22.57■■□□□ 1.2
COL18A1P39060 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL18A1P39060 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL18A1P39060 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC22.57■■□□□ 1.2
COL18A1P39060 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL18A1P39060 LINC00895-201ENST00000629028 1637 ntBASIC22.57■■□□□ 1.2
COL18A1P39060 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL18A1P39060 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL18A1P39060 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.56■■□□□ 1.2
COL18A1P39060 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL18A1P39060 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL18A1P39060 AC073592.8-201ENST00000624126 511 ntBASIC22.56■■□□□ 1.2
COL18A1P39060 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC22.56■■□□□ 1.2
COL18A1P39060 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC22.56■■□□□ 1.2
COL18A1P39060 EGFEM1P-202ENST00000431685 1563 ntBASIC22.56■■□□□ 1.2
COL18A1P39060 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC22.56■■□□□ 1.2
COL18A1P39060 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC22.56■■□□□ 1.2
COL18A1P39060 HARS-204ENST00000438307 1789 ntTSL 2 BASIC22.56■■□□□ 1.2
COL18A1P39060 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL18A1P39060 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL18A1P39060 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
COL18A1P39060 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC22.55■■□□□ 1.2
COL18A1P39060 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC22.55■■□□□ 1.2
COL18A1P39060 COQ4-205ENST00000609948 956 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 AC022144.1-201ENST00000602255 1580 ntBASIC22.55■■□□□ 1.2
COL18A1P39060 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 EDF1-203ENST00000371649 790 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC22.55■■□□□ 1.2
COL18A1P39060 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC22.55■■□□□ 1.2
COL18A1P39060 AL138828.2-201ENST00000615812 383 ntBASIC22.55■■□□□ 1.2
COL18A1P39060 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC22.55■■□□□ 1.2
COL18A1P39060 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL18A1P39060 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
COL18A1P39060 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
COL18A1P39060 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC22.55■■□□□ 1.2
COL18A1P39060 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC22.55■■□□□ 1.2
COL18A1P39060 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.54■■□□□ 1.2
COL18A1P39060 AC098818.2-201ENST00000564925 2320 ntBASIC22.54■■□□□ 1.2
COL18A1P39060 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
COL18A1P39060 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC22.54■■□□□ 1.2
COL18A1P39060 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC22.54■■□□□ 1.2
COL18A1P39060 AL138918.1-201ENST00000568306 659 ntBASIC22.54■■□□□ 1.2
COL18A1P39060 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
COL18A1P39060 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
COL18A1P39060 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
COL18A1P39060 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
COL18A1P39060 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
COL18A1P39060 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC22.54■■□□□ 1.2
COL18A1P39060 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
COL18A1P39060 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL18A1P39060 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC22.53■■□□□ 1.2
COL18A1P39060 BANF1P1-201ENST00000553684 263 ntBASIC22.53■■□□□ 1.2
COL18A1P39060 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC22.53■■□□□ 1.2
COL18A1P39060 AC007967.4-201ENST00000614700 386 ntBASIC22.53■■□□□ 1.2
COL18A1P39060 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC22.53■■□□□ 1.2
COL18A1P39060 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
COL18A1P39060 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
COL18A1P39060 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL18A1P39060 OR8S1-201ENST00000310194 1080 ntBASIC22.53■■□□□ 1.2
COL18A1P39060 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC22.53■■□□□ 1.2
COL18A1P39060 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC22.53■■□□□ 1.2
COL18A1P39060 AC009477.1-201ENST00000452936 217 ntBASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms