Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL5A3P25940 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL5A3P25940 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A3P25940 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A3P25940 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 MIR4453-201ENST00000584019 89 ntBASIC21.55■■□□□ 1.04
COL5A3P25940 AC007967.4-201ENST00000614700 386 ntBASIC21.55■■□□□ 1.04
COL5A3P25940 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL5A3P25940 AL590560.3-201ENST00000623350 461 ntBASIC21.55■■□□□ 1.04
COL5A3P25940 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A3P25940 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
COL5A3P25940 HARS-204ENST00000438307 1789 ntTSL 2 BASIC21.54■■□□□ 1.04
COL5A3P25940 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.54■■□□□ 1.04
COL5A3P25940 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL5A3P25940 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
COL5A3P25940 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21.54■■□□□ 1.04
COL5A3P25940 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.54■■□□□ 1.04
COL5A3P25940 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC21.54■■□□□ 1.04
COL5A3P25940 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.54■■□□□ 1.04
COL5A3P25940 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL5A3P25940 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.54■■□□□ 1.04
COL5A3P25940 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A3P25940 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.53■■□□□ 1.04
COL5A3P25940 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 MIR346-201ENST00000362234 95 ntBASIC21.53■■□□□ 1.04
COL5A3P25940 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.53■■□□□ 1.04
COL5A3P25940 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.53■■□□□ 1.04
COL5A3P25940 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC21.53■■□□□ 1.04
COL5A3P25940 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.53■■□□□ 1.04
COL5A3P25940 BANF1P1-201ENST00000553684 263 ntBASIC21.53■■□□□ 1.04
COL5A3P25940 AL138828.2-201ENST00000615812 383 ntBASIC21.53■■□□□ 1.04
COL5A3P25940 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL5A3P25940 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.53■■□□□ 1.04
COL5A3P25940 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A3P25940 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL5A3P25940 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A3P25940 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A3P25940 OR8S1-201ENST00000310194 1080 ntBASIC21.52■■□□□ 1.04
COL5A3P25940 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A3P25940 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A3P25940 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.52■■□□□ 1.04
COL5A3P25940 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC21.52■■□□□ 1.04
COL5A3P25940 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
COL5A3P25940 AC004840.1-201ENST00000636359 365 ntBASIC21.52■■□□□ 1.04
COL5A3P25940 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.52■■□□□ 1.04
COL5A3P25940 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.52■■□□□ 1.04
COL5A3P25940 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.52■■□□□ 1.04
COL5A3P25940 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A3P25940 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
COL5A3P25940 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.52■■□□□ 1.03
COL5A3P25940 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.52■■□□□ 1.03
COL5A3P25940 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.52■■□□□ 1.03
COL5A3P25940 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL5A3P25940 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC21.52■■□□□ 1.03
COL5A3P25940 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL5A3P25940 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL5A3P25940 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.52■■□□□ 1.03
COL5A3P25940 AC009118.2-201ENST00000613275 655 ntBASIC21.52■■□□□ 1.03
COL5A3P25940 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL5A3P25940 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A3P25940 AC131009.4-201ENST00000624048 1740 ntBASIC21.51■■□□□ 1.03
COL5A3P25940 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A3P25940 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A3P25940 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A3P25940 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
COL5A3P25940 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A3P25940 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms