Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 AP002414.1-201ENST00000391405 1147 ntBASIC18.24■□□□□ 0.51
BDNFP23560 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.24■□□□□ 0.51
BDNFP23560 AL591424.1-201ENST00000442569 1213 ntBASIC18.24■□□□□ 0.51
BDNFP23560 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.24■□□□□ 0.51
BDNFP23560 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.24■□□□□ 0.51
BDNFP23560 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 AC004790.2-201ENST00000623588 572 ntBASIC18.24■□□□□ 0.51
BDNFP23560 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
BDNFP23560 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.23■□□□□ 0.51
BDNFP23560 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.23■□□□□ 0.51
BDNFP23560 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.23■□□□□ 0.51
BDNFP23560 KRT18P3-201ENST00000451602 1288 ntBASIC18.23■□□□□ 0.51
BDNFP23560 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
BDNFP23560 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.23■□□□□ 0.51
BDNFP23560 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.23■□□□□ 0.51
BDNFP23560 MIR4751-201ENST00000578027 74 ntBASIC18.23■□□□□ 0.51
BDNFP23560 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.23■□□□□ 0.51
BDNFP23560 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.23■□□□□ 0.51
BDNFP23560 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
BDNFP23560 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 PI4KAP1-204ENST00000612579 1703 ntBASIC18.23■□□□□ 0.51
BDNFP23560 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
BDNFP23560 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.23■□□□□ 0.51
BDNFP23560 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.23■□□□□ 0.51
BDNFP23560 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BDNFP23560 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
BDNFP23560 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.22■□□□□ 0.51
BDNFP23560 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
BDNFP23560 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
BDNFP23560 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.22■□□□□ 0.51
BDNFP23560 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.22■□□□□ 0.51
BDNFP23560 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.22■□□□□ 0.51
BDNFP23560 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.22■□□□□ 0.51
BDNFP23560 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
BDNFP23560 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
BDNFP23560 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.22■□□□□ 0.51
BDNFP23560 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
BDNFP23560 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.22■□□□□ 0.51
BDNFP23560 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
BDNFP23560 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BDNFP23560 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.21■□□□□ 0.51
BDNFP23560 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.21■□□□□ 0.51
BDNFP23560 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms