Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 AC046185.3-201ENST00000623228 1824 ntBASIC16.14■□□□□ 0.17
PRKNO60260 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PRKNO60260 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PRKNO60260 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.13■□□□□ 0.17
PRKNO60260 AL590627.1-203ENST00000421194 1026 ntBASIC16.13■□□□□ 0.17
PRKNO60260 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.13■□□□□ 0.17
PRKNO60260 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.13■□□□□ 0.17
PRKNO60260 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.13■□□□□ 0.17
PRKNO60260 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.13■□□□□ 0.17
PRKNO60260 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PRKNO60260 AC120114.3-201ENST00000611923 658 ntBASIC16.13■□□□□ 0.17
PRKNO60260 AC008735.5-201ENST00000623544 497 ntBASIC16.13■□□□□ 0.17
PRKNO60260 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 AP002414.3-201ENST00000589352 1468 ntBASIC16.13■□□□□ 0.17
PRKNO60260 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PRKNO60260 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 IL9RP2-201ENST00000423948 1312 ntBASIC16.13■□□□□ 0.17
PRKNO60260 PKD1P1-201ENST00000458669 6805 ntBASIC16.13■□□□□ 0.17
PRKNO60260 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PRKNO60260 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.13■□□□□ 0.17
PRKNO60260 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PRKNO60260 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PRKNO60260 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.12■□□□□ 0.17
PRKNO60260 LAGE3P1-201ENST00000425356 484 ntBASIC16.12■□□□□ 0.17
PRKNO60260 AC092910.1-201ENST00000482027 1129 ntBASIC16.12■□□□□ 0.17
PRKNO60260 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.12■□□□□ 0.17
PRKNO60260 SLC25A1P1-201ENST00000528351 927 ntBASIC16.12■□□□□ 0.17
PRKNO60260 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PRKNO60260 AC139887.3-201ENST00000568585 713 ntBASIC16.12■□□□□ 0.17
PRKNO60260 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.12■□□□□ 0.17
PRKNO60260 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PRKNO60260 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PRKNO60260 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 AL135999.2-201ENST00000622438 1686 ntBASIC16.11■□□□□ 0.17
PRKNO60260 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 AC097637.2-201ENST00000624096 1997 ntBASIC16.11■□□□□ 0.17
PRKNO60260 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms