Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 MIR6775-201ENST00000617557 69 ntBASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TMEM88BA6NKF7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AC142381.1-201ENST00000426099 345 ntBASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AC093004.1-201ENST00000508850 424 ntBASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AL023806.1-201ENST00000603994 1649 ntBASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AC046185.3-201ENST00000623228 1824 ntBASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 AFG3L1P-217ENST00000557444 2447 ntBASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TMEM88BA6NKF7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
TMEM88BA6NKF7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AC092506.1-202ENST00000401022 528 ntBASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 OSM-203ENST00000403463 464 ntTSL 3 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 AC007431.3-201ENST00000623221 587 ntBASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 CETN4P-206ENST00000642099 2168 ntBASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TMEM88BA6NKF7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 BTBD7P1-201ENST00000447253 1453 ntBASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 SPDYE19P-201ENST00000338590 713 ntBASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 RN7SL219P-201ENST00000582872 296 ntBASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 AL109936.8-201ENST00000641772 604 ntBASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TMEM88BA6NKF7 AC016027.1-202ENST00000607927 1699 ntBASIC19.87■□□□□ 0.77
TMEM88BA6NKF7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TMEM88BA6NKF7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms