Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 MCCD1P2-201ENST00000423228 335 ntBASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 DNAJB3-201ENST00000446806 729 ntBASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 MTDHP5-201ENST00000598980 586 ntBASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 AC004877.2-201ENST00000623941 599 ntBASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SMIM28A0A1B0GU29 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 FAM185BP-201ENST00000443595 716 ntBASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 CXCL1P1-201ENST00000502804 216 ntBASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 AC055717.3-201ENST00000622967 595 ntBASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMIM28A0A1B0GU29 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 SLC25A1P3-201ENST00000395415 828 ntBASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 MIR3687-2-201ENST00000577708 61 ntBASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 MIR3687-1-201ENST00000614492 61 ntBASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 BCAR1-209ENST00000546196 1340 ntBASIC18.48■□□□□ 0.55
SMIM28A0A1B0GU29 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SMIM28A0A1B0GU29 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms