Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 AC009336.1-201ENST00000608941 1553 ntBASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AC078925.2-201ENST00000624013 1973 ntBASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PCDHA3Q9Y5H8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 AC091607.1-201ENST00000490318 1060 ntBASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 STK19B-204ENST00000512515 211 ntBASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.11■□□□□ 0.49
PCDHA3Q9Y5H8 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AC132938.5-201ENST00000624980 1813 ntBASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AC011467.2-201ENST00000598425 242 ntBASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AD001527.2-201ENST00000622994 785 ntBASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHA3Q9Y5H8 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHA3Q9Y5H8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHA3Q9Y5H8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms