Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 FAM86C2P-203ENST00000528684 1004 ntBASIC19.29■□□□□ 0.68
VTA1Q9NP79 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 AC099522.2-201ENST00000607001 744 ntBASIC19.29■□□□□ 0.68
VTA1Q9NP79 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 MIR770-201ENST00000390219 98 ntBASIC19.28■□□□□ 0.68
VTA1Q9NP79 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 AC026120.1-201ENST00000611536 926 ntBASIC19.28■□□□□ 0.68
VTA1Q9NP79 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VTA1Q9NP79 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VTA1Q9NP79 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 TIMM8BP1-201ENST00000452384 211 ntBASIC19.27■□□□□ 0.68
VTA1Q9NP79 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 MIR3197-201ENST00000582241 73 ntBASIC19.27■□□□□ 0.68
VTA1Q9NP79 MIR4515-201ENST00000584082 81 ntBASIC19.27■□□□□ 0.68
VTA1Q9NP79 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.27■□□□□ 0.68
VTA1Q9NP79 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VTA1Q9NP79 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VTA1Q9NP79 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VTA1Q9NP79 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
VTA1Q9NP79 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms