Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 AL031284.1-201ENST00000419297 478 ntBASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 HNRNPDP1-201ENST00000439535 754 ntBASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM39Q9HCM9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 HLA-A-201ENST00000376802 1334 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 AC046185.3-201ENST00000623228 1824 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 AC099398.1-201ENST00000567919 2776 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 RPS2P1-201ENST00000434010 821 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 OR7E14P-202ENST00000530490 1290 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 AP001005.1-201ENST00000571755 1248 ntBASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM39Q9HCM9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 LYSMD4-203ENST00000378904 2122 ntBASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 RNA5SP419-201ENST00000515908 135 ntBASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AL589182.2-201ENST00000619332 1049 ntBASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 AC107918.4-202ENST00000641623 219 ntBASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
TRIM39Q9HCM9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.21■□□□□ 0.34
TRIM39Q9HCM9 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM39Q9HCM9 AC139713.2-201ENST00000641328 2723 ntBASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms