Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC007967.3-201ENST00000434308 558 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC104819.1-201ENST00000504587 486 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 IGHV3-52-201ENST00000519770 353 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC012615.1-201ENST00000565797 1299 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 NSUN5P1-202ENST00000421140 1535 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 NSUN5P2-203ENST00000457352 1529 ntBASIC17.93■□□□□ 0.46
PCDH9Q9HC56 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 PKD1P1-201ENST00000458669 6805 ntBASIC17.92■□□□□ 0.46
PCDH9Q9HC56 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 IGHV3-47-201ENST00000425060 335 ntBASIC17.92■□□□□ 0.46
PCDH9Q9HC56 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 MINOS1P3-201ENST00000457048 203 ntBASIC17.92■□□□□ 0.46
PCDH9Q9HC56 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 AC105020.1-201ENST00000435356 2205 ntBASIC17.92■□□□□ 0.46
PCDH9Q9HC56 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PCDH9Q9HC56 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 AC109462.3-201ENST00000573934 613 ntBASIC17.91■□□□□ 0.46
PCDH9Q9HC56 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.91■□□□□ 0.46
PCDH9Q9HC56 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDH9Q9HC56 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms