Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.99□□□□□ -0.01
COL12A1Q99715 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.99□□□□□ -0.01
COL12A1Q99715 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 COG4-212ENST00000564653 590 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 AL513480.1-201ENST00000451731 511 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 RARRES2P8-201ENST00000566335 367 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.98□□□□□ -0.01
COL12A1Q99715 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.98□□□□□ -0.01
COL12A1Q99715 DFFBP1-201ENST00000433250 979 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.98□□□□□ -0.01
COL12A1Q99715 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.98□□□□□ -0.01
COL12A1Q99715 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.98□□□□□ -0.01
COL12A1Q99715 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL12A1Q99715 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL12A1Q99715 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL12A1Q99715 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.97□□□□□ -0.01
COL12A1Q99715 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
COL12A1Q99715 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 AC008735.3-201ENST00000596646 500 ntBASIC14.97□□□□□ -0.01
COL12A1Q99715 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 SPDYE12P-201ENST00000618416 771 ntBASIC14.97□□□□□ -0.01
COL12A1Q99715 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.97□□□□□ -0.01
COL12A1Q99715 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL12A1Q99715 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL12A1Q99715 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
COL12A1Q99715 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.96□□□□□ -0.01
COL12A1Q99715 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.96□□□□□ -0.01
COL12A1Q99715 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.96□□□□□ -0.01
COL12A1Q99715 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 AL023806.1-201ENST00000603994 1649 ntBASIC14.96□□□□□ -0.01
COL12A1Q99715 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL12A1Q99715 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.96□□□□□ -0.01
COL12A1Q99715 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms