Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00477Q96M19 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00477Q96M19 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
LINC00477Q96M19 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00477Q96M19 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC13.02□□□□□ -0.32
LINC00477Q96M19 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 KRT18P38-201ENST00000449496 1282 ntBASIC13.02□□□□□ -0.33
LINC00477Q96M19 TK2-213ENST00000563369 882 ntTSL 5 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 AC109462.3-201ENST00000573934 613 ntBASIC13.02□□□□□ -0.33
LINC00477Q96M19 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 HYMAI.1-201ENST00000620949 238 ntBASIC13.02□□□□□ -0.33
LINC00477Q96M19 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00477Q96M19 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
LINC00477Q96M19 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 LINC01238-205ENST00000567549 1107 ntBASIC13.01□□□□□ -0.33
LINC00477Q96M19 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
LINC00477Q96M19 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00477Q96M19 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13□□□□□ -0.33
LINC00477Q96M19 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13□□□□□ -0.33
LINC00477Q96M19 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
LINC00477Q96M19 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00477Q96M19 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms