Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 AC254562.1-201ENST00000417586 456 ntBASIC16.85■□□□□ 0.29
LMX1AQ8TE12 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 FAM58CP-201ENST00000435741 640 ntBASIC16.85■□□□□ 0.29
LMX1AQ8TE12 METTL21AP1-201ENST00000438852 635 ntBASIC16.85■□□□□ 0.29
LMX1AQ8TE12 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1AQ8TE12 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 CNN2P11-201ENST00000429351 262 ntBASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LMX1AQ8TE12 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LMX1AQ8TE12 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LMX1AQ8TE12 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
LMX1AQ8TE12 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms