Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC083849.1-201ENST00000615227 514 ntBASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.33■□□□□ 0.2
CLIP4Q8N3C7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP4Q8N3C7 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 DUX4L26-201ENST00000489078 1255 ntBASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 AC022616.7-201ENST00000525383 220 ntBASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP4Q8N3C7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 BX276092.7-203ENST00000637198 1536 ntBASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms