Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AC023632.3-201ENST00000521633 145 ntBASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 AC092171.4-201ENST00000609130 632 ntBASIC10.8□□□□□ -0.68
LINC00643Q86TS7 BHLHE23-202ENST00000612929 1109 ntBASIC10.8□□□□□ -0.68
LINC00643Q86TS7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
LINC00643Q86TS7 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 GPX1-201ENST00000419349 1106 ntBASIC10.79□□□□□ -0.68
LINC00643Q86TS7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 AC008764.7-201ENST00000593779 1081 ntBASIC10.79□□□□□ -0.68
LINC00643Q86TS7 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
LINC00643Q86TS7 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 REXO1L2P-201ENST00000425429 2069 ntBASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 CR383656.2-201ENST00000548656 2254 ntBASIC10.78□□□□□ -0.68
LINC00643Q86TS7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms