Protein–RNA interactions for Protein: Q5T6M2

LINC00242, Putative uncharacterized protein encoded by LINC00242, humanhuman

Predictions only

Length 205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00242Q5T6M2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 HMGA1P5-201ENST00000412453 271 ntBASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 AC124947.2-201ENST00000547118 1133 ntBASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 AC092068.3-201ENST00000587894 2016 ntBASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00242Q5T6M2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 DDT-203ENST00000403754 569 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 AC096633.1-201ENST00000422446 749 ntBASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 DDT-206ENST00000430101 573 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 FAM87A-204ENST00000613235 858 ntBASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 CYP2D8P-201ENST00000433633 1490 ntBASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 PCDHA1-201ENST00000378133 2726 ntBASIC11.88□□□□□ -0.51
LINC00242Q5T6M2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
LINC00242Q5T6M2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms