Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 AC022188.1-201ENST00000620960 1664 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 PCDHB17P-201ENST00000539533 2393 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX4Q33E94 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RFX4Q33E94 AP000523.1-201ENST00000398242 1049 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX4Q33E94 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX4Q33E94 AC113404.2-201ENST00000507884 177 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX4Q33E94 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 AL157888.1-201ENST00000631930 593 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX4Q33E94 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RFX4Q33E94 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX4Q33E94 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX4Q33E94 AL513523.2-202ENST00000427283 2040 ntBASIC16.18■□□□□ 0.18
RFX4Q33E94 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 KRT18P65-201ENST00000439811 1286 ntBASIC16.17■□□□□ 0.18
RFX4Q33E94 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.17■□□□□ 0.18
RFX4Q33E94 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RFX4Q33E94 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX4Q33E94 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX4Q33E94 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX4Q33E94 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
RFX4Q33E94 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.16■□□□□ 0.18
RFX4Q33E94 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX4Q33E94 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 AL139327.4-201ENST00000612362 153 ntBASIC16.16■□□□□ 0.18
RFX4Q33E94 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX4Q33E94 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX4Q33E94 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms