Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.26■□□□□ 0.83
MRE11P49959 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.26■□□□□ 0.83
MRE11P49959 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.26■□□□□ 0.83
MRE11P49959 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 AC139530.3-201ENST00000620344 690 ntBASIC20.26■□□□□ 0.83
MRE11P49959 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.26■□□□□ 0.83
MRE11P49959 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MRE11P49959 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.26■□□□□ 0.83
MRE11P49959 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.25■□□□□ 0.83
MRE11P49959 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC20.25■□□□□ 0.83
MRE11P49959 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.25■□□□□ 0.83
MRE11P49959 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.25■□□□□ 0.83
MRE11P49959 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.25■□□□□ 0.83
MRE11P49959 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 MIR149-201ENST00000384879 89 ntBASIC20.25■□□□□ 0.83
MRE11P49959 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 AC092647.4-201ENST00000457211 535 ntBASIC20.25■□□□□ 0.83
MRE11P49959 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.25■□□□□ 0.83
MRE11P49959 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.25■□□□□ 0.83
MRE11P49959 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.25■□□□□ 0.83
MRE11P49959 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 AC016396.2-201ENST00000562575 1417 ntBASIC20.25■□□□□ 0.83
MRE11P49959 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
MRE11P49959 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
MRE11P49959 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MRE11P49959 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC20.24■□□□□ 0.83
MRE11P49959 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 PAUPAR-201ENST00000630360 2965 ntBASIC20.24■□□□□ 0.83
MRE11P49959 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 GPAT2P1-201ENST00000444924 1672 ntBASIC20.24■□□□□ 0.83
MRE11P49959 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 AL022342.1-201ENST00000400363 863 ntBASIC20.24■□□□□ 0.83
MRE11P49959 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.24■□□□□ 0.83
MRE11P49959 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.24■□□□□ 0.83
MRE11P49959 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
MRE11P49959 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
MRE11P49959 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC20.24■□□□□ 0.83
MRE11P49959 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
MRE11P49959 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MRE11P49959 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
MRE11P49959 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms