Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RFX3P48380 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFX3P48380 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 HLA-J-201ENST00000462773 1622 ntBASIC16.34■□□□□ 0.21
RFX3P48380 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
RFX3P48380 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 AC246785.2-201ENST00000432512 513 ntBASIC16.34■□□□□ 0.21
RFX3P48380 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.34■□□□□ 0.21
RFX3P48380 AC104819.1-201ENST00000504587 486 ntBASIC16.34■□□□□ 0.21
RFX3P48380 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.34■□□□□ 0.21
RFX3P48380 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFX3P48380 AC141586.5-201ENST00000624546 2050 ntBASIC16.34■□□□□ 0.21
RFX3P48380 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RFX3P48380 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.34■□□□□ 0.21
RFX3P48380 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFX3P48380 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.33■□□□□ 0.21
RFX3P48380 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.33■□□□□ 0.21
RFX3P48380 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
RFX3P48380 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
RFX3P48380 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFX3P48380 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
RFX3P48380 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFX3P48380 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX3P48380 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.33■□□□□ 0.2
RFX3P48380 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 AC096633.1-201ENST00000422446 749 ntBASIC16.33■□□□□ 0.2
RFX3P48380 KRT17P6-201ENST00000453795 1220 ntBASIC16.33■□□□□ 0.2
RFX3P48380 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.33■□□□□ 0.2
RFX3P48380 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.33■□□□□ 0.2
RFX3P48380 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.33■□□□□ 0.2
RFX3P48380 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.33■□□□□ 0.2
RFX3P48380 AL138831.2-201ENST00000606564 490 ntBASIC16.33■□□□□ 0.2
RFX3P48380 NPAP1P7-201ENST00000613027 823 ntBASIC16.33■□□□□ 0.2
RFX3P48380 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.33■□□□□ 0.2
RFX3P48380 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX3P48380 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RFX3P48380 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX3P48380 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX3P48380 PCDHA12-202ENST00000613593 2588 ntBASIC16.33■□□□□ 0.2
RFX3P48380 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX3P48380 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.32■□□□□ 0.2
RFX3P48380 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX3P48380 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms