Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
HMGB1P09429 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGB1P09429 TSPY19P-201ENST00000418461 509 ntBASIC20.46■□□□□ 0.87
HMGB1P09429 TSPY18P-201ENST00000441642 509 ntBASIC20.46■□□□□ 0.87
HMGB1P09429 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB1P09429 PRYP5-201ENST00000451909 266 ntBASIC20.46■□□□□ 0.87
HMGB1P09429 KRT18P31-201ENST00000506277 1292 ntBASIC20.46■□□□□ 0.87
HMGB1P09429 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGB1P09429 AP001269.4-201ENST00000609611 512 ntBASIC20.46■□□□□ 0.87
HMGB1P09429 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGB1P09429 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGB1P09429 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB1P09429 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
HMGB1P09429 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB1P09429 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
HMGB1P09429 AC012313.1-201ENST00000593393 3059 ntBASIC20.45■□□□□ 0.86
HMGB1P09429 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGB1P09429 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
HMGB1P09429 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HMGB1P09429 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.45■□□□□ 0.86
HMGB1P09429 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.45■□□□□ 0.86
HMGB1P09429 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB1P09429 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HMGB1P09429 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HMGB1P09429 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 AC106820.2-201ENST00000563775 3264 ntBASIC20.44■□□□□ 0.86
HMGB1P09429 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HMGB1P09429 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HMGB1P09429 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGB1P09429 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGB1P09429 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 PRELID1P1-202ENST00000567272 903 ntBASIC20.44■□□□□ 0.86
HMGB1P09429 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGB1P09429 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGB1P09429 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGB1P09429 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
HMGB1P09429 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB1P09429 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HMGB1P09429 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGB1P09429 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGB1P09429 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms