Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.5■□□□□ 0.39
VIMP08670 AC105917.1-201ENST00000506637 2539 ntBASIC17.5■□□□□ 0.39
VIMP08670 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.5■□□□□ 0.39
VIMP08670 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VIMP08670 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.49■□□□□ 0.39
VIMP08670 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 LINC00167-201ENST00000530583 1419 ntBASIC17.49■□□□□ 0.39
VIMP08670 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
VIMP08670 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.49■□□□□ 0.39
VIMP08670 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 AL355802.2-201ENST00000402069 882 ntBASIC17.49■□□□□ 0.39
VIMP08670 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.49■□□□□ 0.39
VIMP08670 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.49■□□□□ 0.39
VIMP08670 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.49■□□□□ 0.39
VIMP08670 AP003097.1-201ENST00000530657 1135 ntBASIC17.49■□□□□ 0.39
VIMP08670 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.49■□□□□ 0.39
VIMP08670 MIR3180-4-201ENST00000582223 153 ntBASIC17.49■□□□□ 0.39
VIMP08670 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.49■□□□□ 0.39
VIMP08670 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VIMP08670 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VIMP08670 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VIMP08670 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.48■□□□□ 0.39
VIMP08670 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 AC104390.1-201ENST00000555663 520 ntBASIC17.48■□□□□ 0.39
VIMP08670 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 AC096733.2-201ENST00000609937 1394 ntBASIC17.48■□□□□ 0.39
VIMP08670 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VIMP08670 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.48■□□□□ 0.39
VIMP08670 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VIMP08670 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VIMP08670 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 LINC01311-201ENST00000565162 1445 ntBASIC17.47■□□□□ 0.39
VIMP08670 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VIMP08670 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VIMP08670 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VIMP08670 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms