Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC046185.3-201ENST00000623228 1824 ntBASIC16.5■□□□□ 0.23
PROM1O43490 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PROM1O43490 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 AC003669.1-201ENST00000334569 611 ntBASIC16.5■□□□□ 0.23
PROM1O43490 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.5■□□□□ 0.23
PROM1O43490 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 TSPY19P-201ENST00000418461 509 ntBASIC16.5■□□□□ 0.23
PROM1O43490 TSPY18P-201ENST00000441642 509 ntBASIC16.5■□□□□ 0.23
PROM1O43490 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 KRT18P31-201ENST00000506277 1292 ntBASIC16.5■□□□□ 0.23
PROM1O43490 STK19B-204ENST00000512515 211 ntBASIC16.5■□□□□ 0.23
PROM1O43490 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.5■□□□□ 0.23
PROM1O43490 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.5■□□□□ 0.23
PROM1O43490 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.5■□□□□ 0.23
PROM1O43490 PRELID1P1-202ENST00000567272 903 ntBASIC16.5■□□□□ 0.23
PROM1O43490 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 PCDHA12-202ENST00000613593 2588 ntBASIC16.5■□□□□ 0.23
PROM1O43490 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
PROM1O43490 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PROM1O43490 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.49■□□□□ 0.23
PROM1O43490 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.49■□□□□ 0.23
PROM1O43490 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.49■□□□□ 0.23
PROM1O43490 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.49■□□□□ 0.23
PROM1O43490 AC009336.1-201ENST00000608941 1553 ntBASIC16.49■□□□□ 0.23
PROM1O43490 AC012313.10-201ENST00000623509 926 ntBASIC16.49■□□□□ 0.23
PROM1O43490 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.49■□□□□ 0.23
PROM1O43490 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PROM1O43490 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.49■□□□□ 0.23
PROM1O43490 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PROM1O43490 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PROM1O43490 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.48■□□□□ 0.23
PROM1O43490 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.48■□□□□ 0.23
PROM1O43490 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PROM1O43490 AC084018.2-201ENST00000613093 2607 ntBASIC16.48■□□□□ 0.23
PROM1O43490 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms