Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.6■□□□□ 0.41
HOXC11O43248 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXC11O43248 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
HOXC11O43248 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC11O43248 AL596442.2-201ENST00000610240 980 ntBASIC17.6■□□□□ 0.41
HOXC11O43248 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC11O43248 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC11O43248 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 AC106820.2-201ENST00000563775 3264 ntBASIC17.6■□□□□ 0.41
HOXC11O43248 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HOXC11O43248 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC11O43248 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HOXC11O43248 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 AC133963.1-201ENST00000504166 1679 ntBASIC17.59■□□□□ 0.41
HOXC11O43248 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 AC129492.6-201ENST00000611383 1305 ntBASIC17.59■□□□□ 0.41
HOXC11O43248 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 ACTG1P14-201ENST00000446382 1122 ntBASIC17.59■□□□□ 0.41
HOXC11O43248 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC11O43248 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HOXC11O43248 SNHG9-202ENST00000564014 471 ntBASIC17.59■□□□□ 0.41
HOXC11O43248 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC11O43248 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.59■□□□□ 0.41
HOXC11O43248 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.59■□□□□ 0.41
HOXC11O43248 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.59■□□□□ 0.41
HOXC11O43248 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC11O43248 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC11O43248 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HOXC11O43248 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HOXC11O43248 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC11O43248 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC11O43248 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.58■□□□□ 0.41
HOXC11O43248 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC11O43248 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC11O43248 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC11O43248 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC11O43248 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HOXC11O43248 AC012317.2-201ENST00000623305 2251 ntBASIC17.58■□□□□ 0.4
HOXC11O43248 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HOXC11O43248 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC11O43248 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 FAM58CP-201ENST00000435741 640 ntBASIC17.58■□□□□ 0.4
HOXC11O43248 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC11O43248 CEND1P1-201ENST00000451006 455 ntBASIC17.58■□□□□ 0.4
HOXC11O43248 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
HOXC11O43248 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.58■□□□□ 0.4
HOXC11O43248 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.58■□□□□ 0.4
HOXC11O43248 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
HOXC11O43248 AL031432.2-201ENST00000566714 459 ntBASIC17.58■□□□□ 0.4
HOXC11O43248 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 AL928711.1-201ENST00000570165 459 ntBASIC17.58■□□□□ 0.4
HOXC11O43248 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.58■□□□□ 0.4
HOXC11O43248 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.58■□□□□ 0.4
HOXC11O43248 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HOXC11O43248 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HOXC11O43248 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC11O43248 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.57■□□□□ 0.4
HOXC11O43248 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC11O43248 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HOXC11O43248 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
HOXC11O43248 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HOXC11O43248 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC11O43248 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.57■□□□□ 0.4
HOXC11O43248 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.57■□□□□ 0.4
HOXC11O43248 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC11O43248 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms