Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HDAC3O15379 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HDAC3O15379 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 AL023973.1-201ENST00000624619 620 ntBASIC16.92■□□□□ 0.3
HDAC3O15379 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.92■□□□□ 0.3
HDAC3O15379 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.92■□□□□ 0.3
HDAC3O15379 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HDAC3O15379 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 AC006449.5-201ENST00000610658 2098 ntBASIC16.92■□□□□ 0.3
HDAC3O15379 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HDAC3O15379 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC3O15379 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 LINC01568-207ENST00000641790 1380 ntBASIC16.91■□□□□ 0.3
HDAC3O15379 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
HDAC3O15379 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 FAM8A6P-201ENST00000407496 1135 ntBASIC16.91■□□□□ 0.3
HDAC3O15379 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.91■□□□□ 0.3
HDAC3O15379 AP003733.1-201ENST00000491725 852 ntBASIC16.91■□□□□ 0.3
HDAC3O15379 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 IGHV3-52-201ENST00000519770 353 ntBASIC16.91■□□□□ 0.3
HDAC3O15379 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.91■□□□□ 0.3
HDAC3O15379 AC140113.3-201ENST00000605663 199 ntBASIC16.91■□□□□ 0.3
HDAC3O15379 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
HDAC3O15379 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDAC3O15379 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC3O15379 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC3O15379 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC3O15379 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC3O15379 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HDAC3O15379 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC3O15379 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC3O15379 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HDAC3O15379 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms