Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HMGB3O15347 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.02□□□□□ -0.17
HMGB3O15347 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
HMGB3O15347 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
HMGB3O15347 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
HMGB3O15347 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HMGB3O15347 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HMGB3O15347 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 HLA-J-201ENST00000462773 1622 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.01□□□□□ -0.17
HMGB3O15347 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
HMGB3O15347 AC239809.2-201ENST00000415381 517 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 FAM207BP-201ENST00000447172 505 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 AC233263.1-201ENST00000578059 224 ntBASIC14.01□□□□□ -0.17
HMGB3O15347 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC14.01□□□□□ -0.17
HMGB3O15347 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
HMGB3O15347 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.01□□□□□ -0.17
HMGB3O15347 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HMGB3O15347 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14□□□□□ -0.17
HMGB3O15347 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14□□□□□ -0.17
HMGB3O15347 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14□□□□□ -0.17
HMGB3O15347 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14□□□□□ -0.17
HMGB3O15347 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14□□□□□ -0.17
HMGB3O15347 PPP1R14BP3-201ENST00000509033 445 ntBASIC14□□□□□ -0.17
HMGB3O15347 DLX3-202ENST00000512495 834 ntTSL 2 BASIC14□□□□□ -0.17
HMGB3O15347 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14□□□□□ -0.17
HMGB3O15347 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC14□□□□□ -0.17
HMGB3O15347 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14□□□□□ -0.17
HMGB3O15347 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 AC069544.1-201ENST00000609399 999 ntBASIC14□□□□□ -0.17
HMGB3O15347 MIR5787-201ENST00000611784 55 ntBASIC14□□□□□ -0.17
HMGB3O15347 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HMGB3O15347 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14□□□□□ -0.17
HMGB3O15347 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms