Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZC3H4Q9UPT8 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 SPTLC1P1-201ENST00000447199 261 ntBASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 AC087163.2-201ENST00000457299 853 ntBASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZC3H4Q9UPT8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 UXT-AS1-201ENST00000590504 1525 ntBASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.87■□□□□ 0.93
ZC3H4Q9UPT8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZC3H4Q9UPT8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 TSSK5P-201ENST00000423978 907 ntBASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 AC116407.2-201ENST00000613639 860 ntBASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms