Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
UPK3BQ9BT76 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 KRT18P67-201ENST00000432816 1264 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 FGFR3P6-201ENST00000457012 610 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AF186996.4-201ENST00000467186 377 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SLC25A6P4-201ENST00000586535 553 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AP001269.4-201ENST00000609611 512 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AP000867.4-201ENST00000641616 219 ntBASIC12.13□□□□□ -0.47
UPK3BQ9BT76 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
UPK3BQ9BT76 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 BX276092.7-203ENST00000637198 1536 ntBASIC12.12□□□□□ -0.47
UPK3BQ9BT76 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 MADD-208ENST00000405573 1823 ntTSL 5 BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
UPK3BQ9BT76 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms