Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 FGFR3P6-201ENST00000457012 610 ntBASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 SART3-203ENST00000546611 1184 ntBASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 HLA-A-201ENST00000376802 1334 ntBASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4CQ96CF2 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 AC002558.1-201ENST00000488906 803 ntBASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.71■□□□□ 0.91
CHMP4CQ96CF2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
CHMP4CQ96CF2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AP005117.1-201ENST00000584346 1413 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 MYCLP1-201ENST00000372451 1075 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 COX5BP2-201ENST00000392354 334 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 HNRNPDP1-201ENST00000439535 754 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms