Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
LMX1AQ8TE12 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 MKNK2P1-201ENST00000437526 628 ntBASIC16.88■□□□□ 0.29
LMX1AQ8TE12 RHOQP3-201ENST00000437982 621 ntBASIC16.88■□□□□ 0.29
LMX1AQ8TE12 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AC023141.13-201ENST00000604991 943 ntBASIC16.88■□□□□ 0.29
LMX1AQ8TE12 LINC01451-201ENST00000623792 534 ntBASIC16.88■□□□□ 0.29
LMX1AQ8TE12 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LMX1AQ8TE12 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 CXCL1P1-201ENST00000502804 216 ntBASIC16.87■□□□□ 0.29
LMX1AQ8TE12 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 AC027796.2-201ENST00000575326 344 ntBASIC16.87■□□□□ 0.29
LMX1AQ8TE12 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 BICD1-207ENST00000551848 1962 ntBASIC16.87■□□□□ 0.29
LMX1AQ8TE12 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LMX1AQ8TE12 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 ELL2P1-201ENST00000413990 1906 ntBASIC16.86■□□□□ 0.29
LMX1AQ8TE12 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 AC074386.1-202ENST00000463561 864 ntBASIC16.86■□□□□ 0.29
LMX1AQ8TE12 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1AQ8TE12 KRT18P28-201ENST00000453838 1332 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms