Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 KLF4P1-201ENST00000412782 1185 ntBASIC18.17■□□□□ 0.5
HDAC4P56524 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.17■□□□□ 0.5
HDAC4P56524 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.17■□□□□ 0.5
HDAC4P56524 AL121772.3-201ENST00000610840 674 ntBASIC18.17■□□□□ 0.5
HDAC4P56524 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HDAC4P56524 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HDAC4P56524 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC4P56524 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 AC148477.5-201ENST00000625164 1645 ntBASIC18.16■□□□□ 0.5
HDAC4P56524 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC4P56524 AC116353.5-201ENST00000638148 1699 ntBASIC18.16■□□□□ 0.5
HDAC4P56524 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC4P56524 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 SLC25A1P3-201ENST00000395415 828 ntBASIC18.16■□□□□ 0.5
HDAC4P56524 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.16■□□□□ 0.5
HDAC4P56524 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.16■□□□□ 0.5
HDAC4P56524 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.16■□□□□ 0.5
HDAC4P56524 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC4P56524 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC4P56524 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
HDAC4P56524 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC4P56524 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC4P56524 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 AL356309.3-201ENST00000624132 1934 ntBASIC18.15■□□□□ 0.5
HDAC4P56524 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 AP005117.1-201ENST00000584346 1413 ntBASIC18.15■□□□□ 0.5
HDAC4P56524 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HDAC4P56524 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HDAC4P56524 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 SPDYE21P-201ENST00000413323 827 ntBASIC18.15■□□□□ 0.5
HDAC4P56524 AC106795.1-205ENST00000512851 1056 ntBASIC18.15■□□□□ 0.5
HDAC4P56524 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.15■□□□□ 0.5
HDAC4P56524 AC091304.2-201ENST00000564639 760 ntBASIC18.15■□□□□ 0.5
HDAC4P56524 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.15■□□□□ 0.5
HDAC4P56524 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
HDAC4P56524 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC4P56524 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.15■□□□□ 0.5
HDAC4P56524 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC4P56524 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.14■□□□□ 0.5
HDAC4P56524 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HDAC4P56524 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms