Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VCPP55072 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 AC100803.2-201ENST00000562459 1963 ntBASIC18.62■□□□□ 0.57
VCPP55072 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 PP12613-201ENST00000424958 2230 ntBASIC18.62■□□□□ 0.57
VCPP55072 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCPP55072 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.62■□□□□ 0.57
VCPP55072 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VCPP55072 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 AC139713.2-201ENST00000641328 2723 ntBASIC18.61■□□□□ 0.57
VCPP55072 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VCPP55072 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 TP73-AS1-210ENST00000637775 1455 ntBASIC18.61■□□□□ 0.57
VCPP55072 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.61■□□□□ 0.57
VCPP55072 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
VCPP55072 OR7E14P-202ENST00000530490 1290 ntBASIC18.61■□□□□ 0.57
VCPP55072 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.61■□□□□ 0.57
VCPP55072 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 MTDHP5-201ENST00000598980 586 ntBASIC18.61■□□□□ 0.57
VCPP55072 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.61■□□□□ 0.57
VCPP55072 AC009154.2-201ENST00000621177 724 ntBASIC18.61■□□□□ 0.57
VCPP55072 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.61■□□□□ 0.57
VCPP55072 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.61■□□□□ 0.57
VCPP55072 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
VCPP55072 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
VCPP55072 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCPP55072 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.6■□□□□ 0.57
VCPP55072 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.6■□□□□ 0.57
VCPP55072 MTCL1P1-201ENST00000446207 792 ntBASIC18.6■□□□□ 0.57
VCPP55072 UNC93B6-202ENST00000528242 690 ntBASIC18.6■□□□□ 0.57
VCPP55072 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.6■□□□□ 0.57
VCPP55072 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.6■□□□□ 0.57
VCPP55072 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
VCPP55072 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
VCPP55072 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.6■□□□□ 0.57
VCPP55072 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCPP55072 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
VCPP55072 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCPP55072 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms