Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.34■□□□□ 0.53
LIG3P49916 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIG3P49916 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG3P49916 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG3P49916 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG3P49916 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.34■□□□□ 0.53
LIG3P49916 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIG3P49916 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
LIG3P49916 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.33■□□□□ 0.52
LIG3P49916 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.33■□□□□ 0.52
LIG3P49916 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.33■□□□□ 0.52
LIG3P49916 RNF126P1-202ENST00000569893 925 ntBASIC18.33■□□□□ 0.52
LIG3P49916 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.33■□□□□ 0.52
LIG3P49916 AC024563.2-201ENST00000603282 481 ntBASIC18.33■□□□□ 0.52
LIG3P49916 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LIG3P49916 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
LIG3P49916 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.33■□□□□ 0.52
LIG3P49916 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
LIG3P49916 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LIG3P49916 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIG3P49916 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 SDHAP2-201ENST00000455183 2001 ntBASIC18.32■□□□□ 0.52
LIG3P49916 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 KRT18P48-201ENST00000434763 852 ntBASIC18.32■□□□□ 0.52
LIG3P49916 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 AP003733.1-201ENST00000491725 852 ntBASIC18.32■□□□□ 0.52
LIG3P49916 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.32■□□□□ 0.52
LIG3P49916 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.32■□□□□ 0.52
LIG3P49916 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.32■□□□□ 0.52
LIG3P49916 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.32■□□□□ 0.52
LIG3P49916 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIG3P49916 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.31■□□□□ 0.52
LIG3P49916 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.31■□□□□ 0.52
LIG3P49916 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.31■□□□□ 0.52
LIG3P49916 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 TSPY22P-201ENST00000427496 604 ntBASIC18.31■□□□□ 0.52
LIG3P49916 BX276092.5-203ENST00000456199 560 ntBASIC18.31■□□□□ 0.52
LIG3P49916 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms