Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL022342.1-201ENST00000400363 863 ntBASIC19.52■□□□□ 0.72
CIITAP33076 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.52■□□□□ 0.72
CIITAP33076 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.52■□□□□ 0.72
CIITAP33076 AC009947.1-201ENST00000444350 727 ntBASIC19.52■□□□□ 0.72
CIITAP33076 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.52■□□□□ 0.72
CIITAP33076 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.52■□□□□ 0.72
CIITAP33076 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 AC034105.1-201ENST00000563488 319 ntBASIC19.52■□□□□ 0.72
CIITAP33076 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.52■□□□□ 0.72
CIITAP33076 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.52■□□□□ 0.71
CIITAP33076 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
CIITAP33076 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
CIITAP33076 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.52■□□□□ 0.71
CIITAP33076 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CIITAP33076 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CIITAP33076 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.52■□□□□ 0.71
CIITAP33076 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 AC093525.9-201ENST00000624961 1746 ntBASIC19.51■□□□□ 0.71
CIITAP33076 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
CIITAP33076 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.51■□□□□ 0.71
CIITAP33076 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 PAWRP1-201ENST00000451083 565 ntBASIC19.51■□□□□ 0.71
CIITAP33076 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.51■□□□□ 0.71
CIITAP33076 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.51■□□□□ 0.71
CIITAP33076 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.51■□□□□ 0.71
CIITAP33076 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 Z83851.2-201ENST00000609564 659 ntBASIC19.51■□□□□ 0.71
CIITAP33076 AF228730.7-201ENST00000641842 219 ntBASIC19.51■□□□□ 0.71
CIITAP33076 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.51■□□□□ 0.71
CIITAP33076 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CIITAP33076 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.51■□□□□ 0.71
CIITAP33076 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CIITAP33076 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.5■□□□□ 0.71
CIITAP33076 EGFEM1P-202ENST00000431685 1563 ntBASIC19.5■□□□□ 0.71
CIITAP33076 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CIITAP33076 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.5■□□□□ 0.71
CIITAP33076 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CIITAP33076 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.5■□□□□ 0.71
CIITAP33076 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CIITAP33076 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CIITAP33076 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CIITAP33076 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.49■□□□□ 0.71
CIITAP33076 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.49■□□□□ 0.71
CIITAP33076 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.49■□□□□ 0.71
CIITAP33076 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CIITAP33076 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.49■□□□□ 0.71
CIITAP33076 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms