Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL5A1P20908 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.52■□□□□ 0.23
COL5A1P20908 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.52■□□□□ 0.23
COL5A1P20908 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.52■□□□□ 0.23
COL5A1P20908 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.52■□□□□ 0.23
COL5A1P20908 AC005237.2-201ENST00000434368 219 ntBASIC16.52■□□□□ 0.23
COL5A1P20908 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.52■□□□□ 0.23
COL5A1P20908 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.52■□□□□ 0.23
COL5A1P20908 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.52■□□□□ 0.23
COL5A1P20908 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL5A1P20908 AL158211.3-201ENST00000607385 239 ntBASIC16.52■□□□□ 0.23
COL5A1P20908 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
COL5A1P20908 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.52■□□□□ 0.23
COL5A1P20908 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
COL5A1P20908 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.51■□□□□ 0.23
COL5A1P20908 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.51■□□□□ 0.23
COL5A1P20908 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.51■□□□□ 0.23
COL5A1P20908 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 AC007274.1-201ENST00000439805 662 ntBASIC16.51■□□□□ 0.23
COL5A1P20908 MIR3909-201ENST00000579518 119 ntBASIC16.51■□□□□ 0.23
COL5A1P20908 MIR4515-201ENST00000584082 81 ntBASIC16.51■□□□□ 0.23
COL5A1P20908 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.51■□□□□ 0.23
COL5A1P20908 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL5A1P20908 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.51■□□□□ 0.23
COL5A1P20908 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 TUBB3P1-201ENST00000405796 1332 ntBASIC16.5■□□□□ 0.23
COL5A1P20908 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.5■□□□□ 0.23
COL5A1P20908 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 AL671277.1-201ENST00000429656 993 ntBASIC16.5■□□□□ 0.23
COL5A1P20908 SLC25A6P5-201ENST00000435663 894 ntBASIC16.5■□□□□ 0.23
COL5A1P20908 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.5■□□□□ 0.23
COL5A1P20908 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.5■□□□□ 0.23
COL5A1P20908 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.5■□□□□ 0.23
COL5A1P20908 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.5■□□□□ 0.23
COL5A1P20908 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.5■□□□□ 0.23
COL5A1P20908 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.5■□□□□ 0.23
COL5A1P20908 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.5■□□□□ 0.23
COL5A1P20908 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL5A1P20908 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.5■□□□□ 0.23
COL5A1P20908 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL5A1P20908 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.5■□□□□ 0.23
COL5A1P20908 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.5■□□□□ 0.23
COL5A1P20908 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.5■□□□□ 0.23
COL5A1P20908 SPDYE14P-201ENST00000442619 822 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 AC125807.1-201ENST00000483097 614 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 AC005225.4-201ENST00000557330 545 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 AC005412.3-201ENST00000580309 715 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 RN7SL204P-201ENST00000582831 262 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 AF228730.6-201ENST00000641497 218 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 AC084121.3-201ENST00000641716 218 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 AC105233.6-201ENST00000642093 218 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL5A1P20908 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms