Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF40O75150 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF40O75150 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF40O75150 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF40O75150 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
RNF40O75150 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF40O75150 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 AL022342.1-201ENST00000400363 863 ntBASIC18.81■□□□□ 0.6
RNF40O75150 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
RNF40O75150 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 AP002469.2-201ENST00000531724 424 ntBASIC18.81■□□□□ 0.6
RNF40O75150 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.81■□□□□ 0.6
RNF40O75150 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.81■□□□□ 0.6
RNF40O75150 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF40O75150 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.81■□□□□ 0.6
RNF40O75150 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF40O75150 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RNF40O75150 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF40O75150 AL357033.4-201ENST00000617703 1807 ntBASIC18.8■□□□□ 0.6
RNF40O75150 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 IGHGP-201ENST00000390555 1178 ntBASIC18.8■□□□□ 0.6
RNF40O75150 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF40O75150 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF40O75150 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 MIR3180-4-201ENST00000582223 153 ntBASIC18.8■□□□□ 0.6
RNF40O75150 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
RNF40O75150 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 AL592071.1-201ENST00000611956 408 ntBASIC18.8■□□□□ 0.6
RNF40O75150 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF40O75150 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF40O75150 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.8■□□□□ 0.6
RNF40O75150 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF40O75150 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RNF40O75150 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF40O75150 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RNF40O75150 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RNF40O75150 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RNF40O75150 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RNF40O75150 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF40O75150 AC079776.4-201ENST00000511039 504 ntBASIC18.79■□□□□ 0.6
RNF40O75150 SLC25A6P4-201ENST00000586535 553 ntBASIC18.79■□□□□ 0.6
RNF40O75150 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.79■□□□□ 0.6
RNF40O75150 AL353801.3-201ENST00000609898 542 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms