Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
NPHP1O15259 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP1O15259 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP1O15259 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP1O15259 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP1O15259 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
NPHP1O15259 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.86■■□□□ 1.09
NPHP1O15259 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.86■■□□□ 1.09
NPHP1O15259 AC004835.2-201ENST00000603762 682 ntBASIC21.86■■□□□ 1.09
NPHP1O15259 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.86■■□□□ 1.09
NPHP1O15259 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
NPHP1O15259 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.86■■□□□ 1.09
NPHP1O15259 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
NPHP1O15259 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.86■■□□□ 1.09
NPHP1O15259 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
NPHP1O15259 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP1O15259 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP1O15259 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
NPHP1O15259 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP1O15259 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.85■■□□□ 1.09
NPHP1O15259 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.85■■□□□ 1.09
NPHP1O15259 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
NPHP1O15259 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.85■■□□□ 1.09
NPHP1O15259 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.85■■□□□ 1.09
NPHP1O15259 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
NPHP1O15259 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP1O15259 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.84■■□□□ 1.09
NPHP1O15259 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP1O15259 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.84■■□□□ 1.09
NPHP1O15259 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC21.84■■□□□ 1.09
NPHP1O15259 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.84■■□□□ 1.09
NPHP1O15259 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.84■■□□□ 1.09
NPHP1O15259 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
NPHP1O15259 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NPHP1O15259 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.84■■□□□ 1.09
NPHP1O15259 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 AL353135.1-201ENST00000606729 504 ntBASIC21.84■■□□□ 1.09
NPHP1O15259 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.84■■□□□ 1.09
NPHP1O15259 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
NPHP1O15259 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP1O15259 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP1O15259 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
NPHP1O15259 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
NPHP1O15259 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.83■■□□□ 1.09
NPHP1O15259 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.83■■□□□ 1.09
NPHP1O15259 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.83■■□□□ 1.09
NPHP1O15259 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP1O15259 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.83■■□□□ 1.09
NPHP1O15259 RHOQP3-201ENST00000437982 621 ntBASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms