Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 AL353807.1-201ENST00000427475 662 ntBASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 GLI3-203ENST00000437480 451 ntTSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SMKR1H3BMG3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 AL513477.1-201ENST00000602865 2407 ntBASIC12.75□□□□□ -0.37
SMKR1H3BMG3 AC073195.1-201ENST00000607241 877 ntBASIC12.75□□□□□ -0.37
SMKR1H3BMG3 AC126755.1-201ENST00000525846 6405 ntBASIC12.75□□□□□ -0.37
SMKR1H3BMG3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SMKR1H3BMG3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SMKR1H3BMG3 AC092364.2-201ENST00000596710 2692 ntBASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms