Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SIX4Q9UIU6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX4Q9UIU6 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SIX4Q9UIU6 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 PTCHD3P3-201ENST00000403073 906 ntBASIC18.56■□□□□ 0.56
SIX4Q9UIU6 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX4Q9UIU6 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 RNA5SP415-201ENST00000517246 115 ntBASIC18.55■□□□□ 0.56
SIX4Q9UIU6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 AL805961.1-202ENST00000641562 540 ntBASIC18.55■□□□□ 0.56
SIX4Q9UIU6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX4Q9UIU6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 AC093525.9-201ENST00000624961 1746 ntBASIC18.54■□□□□ 0.56
SIX4Q9UIU6 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 RPS15P9-201ENST00000494093 319 ntBASIC18.54■□□□□ 0.56
SIX4Q9UIU6 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 UNC93B6-202ENST00000528242 690 ntBASIC18.54■□□□□ 0.56
SIX4Q9UIU6 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 MIR1199-201ENST00000621445 119 ntBASIC18.54■□□□□ 0.56
SIX4Q9UIU6 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 AL645608.8-201ENST00000606034 2086 ntBASIC18.54■□□□□ 0.56
SIX4Q9UIU6 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.54■□□□□ 0.56
SIX4Q9UIU6 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms