Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL353593.2-201ENST00000602529 1483 ntBASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS29Q9UBQ0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 TP73-AS1-210ENST00000637775 1455 ntBASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 AP002383.4-201ENST00000442518 975 ntBASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 TPSP2-201ENST00000561760 610 ntBASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS29Q9UBQ0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 LINC02012-201ENST00000608206 1725 ntBASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 MINOS1P3-201ENST00000457048 203 ntBASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 AP002414.4-201ENST00000589764 1148 ntBASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 AP000550.4-202ENST00000639755 178 ntBASIC16.68■□□□□ 0.26
VPS29Q9UBQ0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms