Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AL355312.1-201ENST00000407115 2176 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AC073621.1-201ENST00000392730 636 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ACTG1P4-201ENST00000425123 1122 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 IGHV3-22-201ENST00000520721 359 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AL139424.1-201ENST00000607572 797 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 PGM5P2-202ENST00000637225 1043 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 AC097637.2-201ENST00000624096 1997 ntBASIC17.48■□□□□ 0.39
DKK3Q9UBP4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
DKK3Q9UBP4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AC092910.1-201ENST00000482027 1129 ntBASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AC136632.2-201ENST00000512891 861 ntBASIC17.47■□□□□ 0.39
DKK3Q9UBP4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 AL356488.2-201ENST00000602755 427 ntBASIC17.47■□□□□ 0.39
DKK3Q9UBP4 MIR1199-201ENST00000621445 119 ntBASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.47■□□□□ 0.39
DKK3Q9UBP4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AP002414.3-201ENST00000589352 1468 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 LINC00982-205ENST00000420957 435 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AP000347.1-202ENST00000435868 847 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 AC098831.1-202ENST00000438821 336 ntBASIC17.46■□□□□ 0.39
DKK3Q9UBP4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.46■□□□□ 0.39
DKK3Q9UBP4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms