Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX2Q9NPC8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 SPDYE21P-201ENST00000413323 827 ntBASIC18.65■□□□□ 0.58
SIX2Q9NPC8 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX2Q9NPC8 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.64■□□□□ 0.58
SIX2Q9NPC8 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX2Q9NPC8 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.64■□□□□ 0.58
SIX2Q9NPC8 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 NUS1P2-201ENST00000417358 873 ntBASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AC093458.2-201ENST00000623150 629 ntBASIC18.64■□□□□ 0.57
SIX2Q9NPC8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 FLJ38576-201ENST00000623820 2459 ntBASIC18.64■□□□□ 0.57
SIX2Q9NPC8 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AC004817.3-201ENST00000602957 2129 ntBASIC18.64■□□□□ 0.57
SIX2Q9NPC8 FRMD8P1-201ENST00000440433 1524 ntBASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX2Q9NPC8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 ABCD1P5-201ENST00000445663 754 ntBASIC18.63■□□□□ 0.57
SIX2Q9NPC8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AC073592.4-201ENST00000623827 446 ntBASIC18.63■□□□□ 0.57
SIX2Q9NPC8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms