Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RNF41Q9H4P4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 AC093909.1-201ENST00000504731 1122 ntBASIC20.5■□□□□ 0.87
RNF41Q9H4P4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 AL353135.1-201ENST00000606729 504 ntBASIC20.5■□□□□ 0.87
RNF41Q9H4P4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 AC008735.5-201ENST00000623544 497 ntBASIC20.5■□□□□ 0.87
RNF41Q9H4P4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF41Q9H4P4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 RNA5SP419-201ENST00000515908 135 ntBASIC20.49■□□□□ 0.87
RNF41Q9H4P4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 HLA-A-201ENST00000376802 1334 ntBASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF41Q9H4P4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF41Q9H4P4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
RNF41Q9H4P4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms