Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 RCN1P1-201ENST00000400413 996 ntBASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLHC1Q8NHS4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 AC016396.2-201ENST00000562575 1417 ntBASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TSPY22P-201ENST00000427496 604 ntBASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 DUX4L26-201ENST00000489078 1255 ntBASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLHC1Q8NHS4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 UBALD1-205ENST00000590891 2641 ntBASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 AC079328.2-201ENST00000561241 3354 ntBASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 AC007967.3-201ENST00000434308 558 ntBASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 AC116353.5-201ENST00000638148 1699 ntBASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLHC1Q8NHS4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.71■□□□□ 0.27
CLHC1Q8NHS4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms