Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.931e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.43■□□□□ 0.861e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-223ENST00000451310 801 ntTSL 220.16■□□□□ 0.821e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.51■□□□□ 0.551e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.371e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.431e-24■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.731e-24■□□□□ 8.8
DDX55Q8NHQ9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.763e-15■□□□□ 8.8
DDX55Q8NHQ9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.533e-15■□□□□ 8.8
DDX55Q8NHQ9 EIF3B-210ENST00000468611 1868 ntTSL 217.7■□□□□ 0.423e-15■□□□□ 8.8
DDX55Q8NHQ9 EIF3B-207ENST00000465670 2766 ntTSL 215.18■□□□□ 0.023e-15■□□□□ 8.8
DDX55Q8NHQ9 EIF3B-211ENST00000475415 3745 ntTSL 210.73□□□□□ -0.693e-15■□□□□ 8.8
DDX55Q8NHQ9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.42■■□□□ 1.823e-8■□□□□ 8.8
DDX55Q8NHQ9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.763e-8■□□□□ 8.8
DDX55Q8NHQ9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.213e-8■□□□□ 8.8
DDX55Q8NHQ9 POLD2-206ENST00000436844 854 ntTSL 522.39■■□□□ 1.173e-8■□□□□ 8.8
DDX55Q8NHQ9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.65■■□□□ 1.063e-8■□□□□ 8.8
DDX55Q8NHQ9 MRPS25-204ENST00000447299 723 ntTSL 320.39■□□□□ 0.853e-8■□□□□ 8.8
DDX55Q8NHQ9 STIP1-210ENST00000540887 877 ntTSL 218.65■□□□□ 0.581e-22■□□□□ 8.8
DDX55Q8NHQ9 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.12■□□□□ 0.493e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-209ENST00000437745 1711 ntTSL 1 (best)16.48■□□□□ 0.233e-8■□□□□ 8.8
DDX55Q8NHQ9 LUC7L-206ENST00000419516 1211 ntTSL 515.99■□□□□ 0.153e-8■□□□□ 8.8
DDX55Q8NHQ9 LUC7L-220ENST00000495349 1006 ntTSL 215.99■□□□□ 0.153e-8■□□□□ 8.8
DDX55Q8NHQ9 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.74■□□□□ 0.111e-22■□□□□ 8.8
DDX55Q8NHQ9 MRPS25-202ENST00000420267 590 ntTSL 415.64■□□□□ 0.093e-8■□□□□ 8.8
DDX55Q8NHQ9 STIP1-204ENST00000536973 738 ntTSL 515.31■□□□□ 0.041e-22■□□□□ 8.8
DDX55Q8NHQ9 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC15.25■□□□□ 0.033e-8■□□□□ 8.8
DDX55Q8NHQ9 LUC7L-205ENST00000418978 989 ntTSL 514.86□□□□□ -0.033e-8■□□□□ 8.8
DDX55Q8NHQ9 LUC7L-210ENST00000430864 695 ntTSL 514.3□□□□□ -0.123e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-214ENST00000630952 1721 ntTSL 5 BASIC13.24□□□□□ -0.293e-8■□□□□ 8.8
DDX55Q8NHQ9 MRPS25-201ENST00000253686 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.453e-8■□□□□ 8.8
DDX55Q8NHQ9 KIF2C-202ENST00000372224 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.613e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-207ENST00000433922 1862 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.613e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-202ENST00000405202 1689 ntTSL 5 BASIC11.06□□□□□ -0.643e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-201ENST00000258761 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.683e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-212ENST00000452975 1464 ntTSL 1 (best) BASIC10.69□□□□□ -0.73e-8■□□□□ 8.8
DDX55Q8NHQ9 KIF2C-201ENST00000372217 2955 ntTSL 1 (best) BASIC9.95□□□□□ -0.823e-8■□□□□ 8.8
DDX55Q8NHQ9 MRPS25-205ENST00000449354 1119 ntTSL 2 BASIC9.91□□□□□ -0.823e-8■□□□□ 8.8
DDX55Q8NHQ9 BZW2-208ENST00000436868 1784 ntTSL 59.65□□□□□ -0.863e-8■□□□□ 8.8
DDX55Q8NHQ9 KIF2C-206ENST00000472235 480 ntTSL 29.13□□□□□ -0.953e-8■□□□□ 8.8
DDX55Q8NHQ9 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC9.05□□□□□ -0.962e-15■□□□□ 8.8
DDX55Q8NHQ9 BTK-202ENST00000372880 2248 ntTSL 2 BASIC9.03□□□□□ -0.962e-15■□□□□ 8.8
DDX55Q8NHQ9 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.012e-15■□□□□ 8.8
DDX55Q8NHQ9 KIF2C-203ENST00000423289 320 ntTSL 58.68□□□□□ -1.023e-8■□□□□ 8.8
DDX55Q8NHQ9 BTK-209ENST00000618050 2417 ntTSL 5 BASIC7.52□□□□□ -1.212e-15■□□□□ 8.8
DDX55Q8NHQ9 POLD2-205ENST00000436400 249 ntTSL 36.31□□□□□ -1.43e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-211ENST00000550973 1111 ntTSL 525.11■■□□□ 1.618e-8■□□□□ 8.8
DDX55Q8NHQ9 ENTPD6-213ENST00000447877 932 ntTSL 523.23■■□□□ 1.311e-6■□□□□ 8.8
DDX55Q8NHQ9 RPL18-201ENST00000084795 612 ntTSL 1 (best)21.52■■□□□ 1.048e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.048e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.52■■□□□ 1.048e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.52■■□□□ 1.048e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-213ENST00000552347 1645 ntTSL 521.2■□□□□ 0.988e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-206ENST00000549370 628 ntTSL 519.65■□□□□ 0.748e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-202ENST00000546623 541 ntTSL 519.46■□□□□ 0.718e-8■□□□□ 8.8
DDX55Q8NHQ9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.712e-8■□□□□ 8.8
DDX55Q8NHQ9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.572e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-212ENST00000551749 2091 ntTSL 218.61■□□□□ 0.578e-8■□□□□ 8.8
DDX55Q8NHQ9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.77■□□□□ 0.282e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-204ENST00000547897 440 ntTSL 516.51■□□□□ 0.238e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC16.3■□□□□ 0.28e-8■□□□□ 8.8
DDX55Q8NHQ9 RPL18-215ENST00000552705 1081 ntTSL 215.75■□□□□ 0.118e-8■□□□□ 8.8
DDX55Q8NHQ9 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.091e-6■□□□□ 8.8
DDX55Q8NHQ9 RPL18-216ENST00000552851 691 ntTSL 515.57■□□□□ 0.088e-8■□□□□ 8.8
DDX55Q8NHQ9 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.082e-8■□□□□ 8.8
DDX55Q8NHQ9 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC12.74□□□□□ -0.371e-6■□□□□ 8.8
DDX55Q8NHQ9 RPL18-203ENST00000547892 3844 nt12.63□□□□□ -0.398e-8■□□□□ 8.8
DDX55Q8NHQ9 UBE2O-204ENST00000587127 3569 ntAPPRIS ALT2 TSL 1 (best)11.21□□□□□ -0.622e-8■□□□□ 8.8
DDX55Q8NHQ9 ST6GAL1-220ENST00000470633 4893 ntTSL 28.28□□□□□ -1.081e-6■□□□□ 8.8
DDX55Q8NHQ9 PUM1-214ENST00000525843 4528 ntTSL 58.13□□□□□ -1.112e-8■□□□□ 8.8
DDX55Q8NHQ9 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.21e-6■□□□□ 8.8
DDX55Q8NHQ9 SERPINA7-203ENST00000487487 395 ntTSL 37.43□□□□□ -1.222e-8■□□□□ 8.8
DDX55Q8NHQ9 DDX39B-203ENST00000417023 561 ntTSL 515.61■□□□□ 0.093e-6■□□□□ 8.8
DDX55Q8NHQ9 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.163e-16■□□□□ 8.8
DDX55Q8NHQ9 TPP1-201ENST00000299427 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.712e-7■□□□□ 8.8
DDX55Q8NHQ9 TPP1-215ENST00000533371 3536 ntTSL 1 (best) BASIC10.63□□□□□ -0.712e-7■□□□□ 8.8
DDX55Q8NHQ9 ACY1-208ENST00000490244 812 ntTSL 215.96■□□□□ 0.153e-7■□□□□ 8.8
DDX55Q8NHQ9 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC12.8□□□□□ -0.363e-7■□□□□ 8.8
DDX55Q8NHQ9 BCL6-202ENST00000406870 3569 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.63e-7■□□□□ 8.8
DDX55Q8NHQ9 ACY1-227ENST00000638077 456 ntTSL 210.88□□□□□ -0.673e-7■□□□□ 8.8
DDX55Q8NHQ9 BCL6-203ENST00000419510 4178 ntTSL 29.38□□□□□ -0.913e-7■□□□□ 8.8
DDX55Q8NHQ9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.94e-12■□□□□ 8.8
DDX55Q8NHQ9 MT2A-204ENST00000563985 688 ntTSL 216.88■□□□□ 0.294e-12■□□□□ 8.8
DDX55Q8NHQ9 MT2A-202ENST00000561491 581 ntTSL 2 BASIC16.69■□□□□ 0.264e-12■□□□□ 8.8
DDX55Q8NHQ9 MT2A-203ENST00000562017 903 nt16.48■□□□□ 0.234e-12■□□□□ 8.8
DDX55Q8NHQ9 MT2A-205ENST00000567300 416 ntTSL 216.36■□□□□ 0.214e-12■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.483e-13■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-206ENST00000464167 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-13■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-208ENST00000485439 677 ntTSL 29.63□□□□□ -0.873e-13■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-209ENST00000496582 579 ntTSL 28.5□□□□□ -1.053e-13■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-201ENST00000329092 456 ntTSL 37.29□□□□□ -1.243e-13■□□□□ 8.8
DDX55Q8NHQ9 RPL35A-202ENST00000429437 442 ntTSL 56.06□□□□□ -1.443e-13■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-213ENST00000621703 2812 ntTSL 1 (best)17.95■□□□□ 0.463e-14■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.77■□□□□ 0.443e-14■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.423e-14■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-214ENST00000622194 2981 ntTSL 517.17■□□□□ 0.343e-14■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.063e-14■□□□□ 8.8
DDX55Q8NHQ9 NPRL3-210ENST00000610509 2917 ntTSL 213.91□□□□□ -0.183e-14■□□□□ 8.8
DDX55Q8NHQ9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.955e-9■□□□□ 8.8
DDX55Q8NHQ9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.315e-9■□□□□ 8.8
Retrieved 100 of 15,504 protein–RNA pairs in 78 ms