Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
USP54Q70EL1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
USP54Q70EL1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
USP54Q70EL1 AC012569.1-201ENST00000591191 1524 ntBASIC22.9■■□□□ 1.26
USP54Q70EL1 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
USP54Q70EL1 KLF2P3-201ENST00000451977 1087 ntBASIC22.9■■□□□ 1.26
USP54Q70EL1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC22.89■■□□□ 1.26
USP54Q70EL1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
USP54Q70EL1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
USP54Q70EL1 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC22.89■■□□□ 1.26
USP54Q70EL1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC22.89■■□□□ 1.26
USP54Q70EL1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
USP54Q70EL1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
USP54Q70EL1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
USP54Q70EL1 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
USP54Q70EL1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC22.89■■□□□ 1.26
USP54Q70EL1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 LINC01225-203ENST00000563550 1244 ntBASIC22.89■■□□□ 1.25
USP54Q70EL1 AC140878.1-201ENST00000565277 250 ntBASIC22.89■■□□□ 1.25
USP54Q70EL1 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC22.89■■□□□ 1.25
USP54Q70EL1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC22.89■■□□□ 1.25
USP54Q70EL1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
USP54Q70EL1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC22.89■■□□□ 1.25
USP54Q70EL1 AL138688.1-201ENST00000624851 1594 ntBASIC22.89■■□□□ 1.25
USP54Q70EL1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
USP54Q70EL1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC22.88■■□□□ 1.25
USP54Q70EL1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC22.88■■□□□ 1.25
USP54Q70EL1 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC22.88■■□□□ 1.25
USP54Q70EL1 AL158211.3-201ENST00000607385 239 ntBASIC22.88■■□□□ 1.25
USP54Q70EL1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC22.88■■□□□ 1.25
USP54Q70EL1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
USP54Q70EL1 FOXO1B-201ENST00000504678 1527 ntBASIC22.88■■□□□ 1.25
USP54Q70EL1 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC22.88■■□□□ 1.25
USP54Q70EL1 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.88■■□□□ 1.25
USP54Q70EL1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
USP54Q70EL1 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC22.88■■□□□ 1.25
USP54Q70EL1 CD99-202ENST00000381180 530 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC22.87■■□□□ 1.25
USP54Q70EL1 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC22.87■■□□□ 1.25
USP54Q70EL1 COX20P2-201ENST00000452636 358 ntBASIC22.87■■□□□ 1.25
USP54Q70EL1 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC22.87■■□□□ 1.25
USP54Q70EL1 YTHDF3-AS1-201ENST00000603538 718 ntBASIC22.87■■□□□ 1.25
USP54Q70EL1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
USP54Q70EL1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 AC092580.3-201ENST00000430932 139 ntBASIC22.87■■□□□ 1.25
USP54Q70EL1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
USP54Q70EL1 KRT8P23-201ENST00000560090 1207 ntBASIC22.87■■□□□ 1.25
USP54Q70EL1 NAA60-208ENST00000570819 833 ntTSL 2 BASIC22.87■■□□□ 1.25
USP54Q70EL1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC22.87■■□□□ 1.25
USP54Q70EL1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC22.86■■□□□ 1.25
USP54Q70EL1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
USP54Q70EL1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.86■■□□□ 1.25
USP54Q70EL1 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC22.86■■□□□ 1.25
USP54Q70EL1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC22.86■■□□□ 1.25
USP54Q70EL1 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC22.86■■□□□ 1.25
USP54Q70EL1 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
USP54Q70EL1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC22.86■■□□□ 1.25
USP54Q70EL1 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP54Q70EL1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms