Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 REXO1L6P-202ENST00000619970 1078 ntBASIC21.03■□□□□ 0.96
VPS53Q5VIR6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 CROCCP2-202ENST00000412962 2773 ntBASIC21.03■□□□□ 0.96
VPS53Q5VIR6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS53Q5VIR6 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 AC103564.2-201ENST00000432853 1299 ntBASIC21.02■□□□□ 0.96
VPS53Q5VIR6 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 RN7SL510P-201ENST00000581311 263 ntBASIC21.02■□□□□ 0.96
VPS53Q5VIR6 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 AP005117.1-201ENST00000584346 1413 ntBASIC21.02■□□□□ 0.96
VPS53Q5VIR6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS53Q5VIR6 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS53Q5VIR6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
VPS53Q5VIR6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS53Q5VIR6 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS53Q5VIR6 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.01■□□□□ 0.95
VPS53Q5VIR6 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 AC002558.1-201ENST00000488906 803 ntBASIC21.01■□□□□ 0.95
VPS53Q5VIR6 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 AL121894.2-201ENST00000602977 491 ntBASIC21.01■□□□□ 0.95
VPS53Q5VIR6 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 LYSMD4-203ENST00000378904 2122 ntBASIC21.01■□□□□ 0.95
VPS53Q5VIR6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS53Q5VIR6 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 AMT-250ENST00000637682 1823 ntTSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 AC106795.1-205ENST00000512851 1056 ntBASIC21■□□□□ 0.95
VPS53Q5VIR6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
VPS53Q5VIR6 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
VPS53Q5VIR6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms