Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.21■□□□□ 0.83
SHROOM1Q2M3G4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 AL139400.1-201ENST00000366220 510 ntBASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHROOM1Q2M3G4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 AC107918.2-201ENST00000530817 355 ntBASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 AP002472.1-201ENST00000577490 586 ntBASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHROOM1Q2M3G4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RFPL4AP1-201ENST00000530883 850 ntBASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM1Q2M3G4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM1Q2M3G4 LINC01451-201ENST00000623792 534 ntBASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms